Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 AP005435.1-201ENST00000529293 1178 ntBASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 AC142086.2-201ENST00000569753 217 ntBASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 AC008687.6-201ENST00000596318 630 ntBASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDLIM3Q53GG5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 MIR4651-201ENST00000582622 73 ntBASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDLIM3Q53GG5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDLIM3Q53GG5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
PDLIM3Q53GG5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDLIM3Q53GG5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDLIM3Q53GG5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
PDLIM3Q53GG5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 AP004607.7-201ENST00000527152 1677 ntBASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 IGHV3-19-201ENST00000521488 291 ntBASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 AC010525.1-201ENST00000585559 441 ntBASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDLIM3Q53GG5 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 AL157384.1-201ENST00000445995 2473 ntBASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDLIM3Q53GG5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms