Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.16■□□□□ 0.34
Sox3P53784 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Sox3P53784 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.15■□□□□ 0.34
Sox3P53784 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.15■□□□□ 0.34
Sox3P53784 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.15■□□□□ 0.34
Sox3P53784 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.15■□□□□ 0.34
Sox3P53784 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Sox3P53784 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Sox3P53784 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Sox3P53784 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.15■□□□□ 0.34
Sox3P53784 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox3P53784 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.34
Sox3P53784 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.14■□□□□ 0.33
Sox3P53784 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Sox3P53784 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.14■□□□□ 0.33
Sox3P53784 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sox3P53784 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.13■□□□□ 0.33
Sox3P53784 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox3P53784 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Sox3P53784 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.13■□□□□ 0.33
Sox3P53784 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Gm7367-201ENSMUST00000057611 492 ntBASIC17.13■□□□□ 0.33
Sox3P53784 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox3P53784 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.13■□□□□ 0.33
Sox3P53784 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Sox3P53784 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox3P53784 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Sox3P53784 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Sox3P53784 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Sox3P53784 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Gm44549-201ENSMUST00000208351 577 ntBASIC17.12■□□□□ 0.33
Sox3P53784 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox3P53784 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
Sox3P53784 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Sox3P53784 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.11■□□□□ 0.33
Sox3P53784 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.11■□□□□ 0.33
Sox3P53784 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.11■□□□□ 0.33
Sox3P53784 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox3P53784 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Sox3P53784 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sox3P53784 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Sox3P53784 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sox3P53784 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.1■□□□□ 0.33
Sox3P53784 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.1■□□□□ 0.33
Sox3P53784 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.1■□□□□ 0.33
Sox3P53784 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sox3P53784 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox3P53784 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms