Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 CROCCP5-201ENST00000436658 830 ntBASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 AC016405.3-201ENST00000607710 860 ntBASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV41A0A0B4J266 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 RARRES2P4-201ENST00000514074 484 ntBASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 OR10C1-204ENST00000622521 1039 ntBASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV41A0A0B4J266 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV41A0A0B4J266 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 AL137060.1-201ENST00000618151 2648 ntBASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV41A0A0B4J266 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 AF201337.1-201ENST00000520239 748 ntBASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 AC133552.2-202ENST00000575694 574 ntBASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 AL050303.2-201ENST00000619798 666 ntBASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 CLDN5-201ENST00000403084 2357 ntBASIC16.16■□□□□ 0.18
TRAV41A0A0B4J266 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms