Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 LINC01006-201ENST00000333319 2292 ntBASIC21.07■□□□□ 0.96
TOP3BO95985 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.07■□□□□ 0.96
TOP3BO95985 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.07■□□□□ 0.96
TOP3BO95985 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.07■□□□□ 0.96
TOP3BO95985 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.07■□□□□ 0.96
TOP3BO95985 AC105036.2-201ENST00000569468 176 ntBASIC21.07■□□□□ 0.96
TOP3BO95985 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.07■□□□□ 0.96
TOP3BO95985 SMUG1P1-201ENST00000590640 811 ntBASIC21.07■□□□□ 0.96
TOP3BO95985 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.07■□□□□ 0.96
TOP3BO95985 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TOP3BO95985 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 DUSP5P2-201ENST00000426873 1033 ntBASIC21.06■□□□□ 0.96
TOP3BO95985 AC073210.2-201ENST00000430369 194 ntBASIC21.06■□□□□ 0.96
TOP3BO95985 AF201337.1-201ENST00000520239 748 ntBASIC21.06■□□□□ 0.96
TOP3BO95985 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.06■□□□□ 0.96
TOP3BO95985 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.06■□□□□ 0.96
TOP3BO95985 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 UBE2DNL-204ENST00000602536 740 ntBASIC21.06■□□□□ 0.96
TOP3BO95985 AC104187.1-201ENST00000607510 612 ntBASIC21.06■□□□□ 0.96
TOP3BO95985 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.06■□□□□ 0.96
TOP3BO95985 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TOP3BO95985 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.05■□□□□ 0.96
TOP3BO95985 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
TOP3BO95985 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TOP3BO95985 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.05■□□□□ 0.96
TOP3BO95985 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.05■□□□□ 0.96
TOP3BO95985 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.05■□□□□ 0.96
TOP3BO95985 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.05■□□□□ 0.96
TOP3BO95985 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.05■□□□□ 0.96
TOP3BO95985 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TOP3BO95985 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TOP3BO95985 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.04■□□□□ 0.96
TOP3BO95985 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 PKD1P6-201ENST00000343738 4769 ntBASIC21.04■□□□□ 0.96
TOP3BO95985 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TOP3BO95985 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.04■□□□□ 0.96
TOP3BO95985 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TOP3BO95985 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.04■□□□□ 0.96
TOP3BO95985 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.04■□□□□ 0.96
TOP3BO95985 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.04■□□□□ 0.96
TOP3BO95985 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.04■□□□□ 0.96
TOP3BO95985 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.04■□□□□ 0.96
TOP3BO95985 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 SLC7A5P1-201ENST00000568957 537 ntBASIC21.04■□□□□ 0.96
TOP3BO95985 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.04■□□□□ 0.96
TOP3BO95985 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.04■□□□□ 0.96
TOP3BO95985 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TOP3BO95985 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 AL049796.1-201ENST00000565336 1766 ntBASIC21.03■□□□□ 0.96
TOP3BO95985 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TOP3BO95985 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TOP3BO95985 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.03■□□□□ 0.96
TOP3BO95985 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.03■□□□□ 0.96
TOP3BO95985 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.03■□□□□ 0.96
TOP3BO95985 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
TOP3BO95985 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.03■□□□□ 0.96
TOP3BO95985 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TOP3BO95985 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TOP3BO95985 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
TOP3BO95985 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
TOP3BO95985 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TOP3BO95985 AC092667.1-201ENST00000434301 2586 ntBASIC21.02■□□□□ 0.96
TOP3BO95985 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms