Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.78■□□□□ 0.92
VIMP08670 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VIMP08670 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.78■□□□□ 0.92
VIMP08670 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 AL162377.1-201ENST00000618844 1793 ntBASIC20.78■□□□□ 0.92
VIMP08670 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.78■□□□□ 0.92
VIMP08670 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
VIMP08670 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.78■□□□□ 0.92
VIMP08670 AC004987.1-201ENST00000428627 508 ntBASIC20.78■□□□□ 0.92
VIMP08670 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.78■□□□□ 0.92
VIMP08670 AC012354.3-201ENST00000623734 483 ntBASIC20.78■□□□□ 0.92
VIMP08670 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.78■□□□□ 0.92
VIMP08670 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
VIMP08670 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.78■□□□□ 0.92
VIMP08670 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VIMP08670 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.77■□□□□ 0.92
VIMP08670 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VIMP08670 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
VIMP08670 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 AC099778.1-201ENST00000568593 1911 ntBASIC20.77■□□□□ 0.92
VIMP08670 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.77■□□□□ 0.92
VIMP08670 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.77■□□□□ 0.92
VIMP08670 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VIMP08670 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.77■□□□□ 0.91
VIMP08670 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VIMP08670 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.76■□□□□ 0.91
VIMP08670 AL034346.1-201ENST00000568244 1277 ntBASIC20.76■□□□□ 0.91
VIMP08670 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.76■□□□□ 0.91
VIMP08670 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VIMP08670 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.76■□□□□ 0.91
VIMP08670 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VIMP08670 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.76■□□□□ 0.91
VIMP08670 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VIMP08670 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VIMP08670 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VIMP08670 AIRN-201ENST00000601203 4374 ntBASIC20.76■□□□□ 0.91
VIMP08670 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.75■□□□□ 0.91
VIMP08670 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.75■□□□□ 0.91
VIMP08670 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 AC098818.2-201ENST00000564925 2320 ntBASIC20.75■□□□□ 0.91
VIMP08670 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.75■□□□□ 0.91
VIMP08670 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.75■□□□□ 0.91
VIMP08670 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.75■□□□□ 0.91
VIMP08670 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.75■□□□□ 0.91
VIMP08670 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VIMP08670 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VIMP08670 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VIMP08670 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
VIMP08670 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VIMP08670 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.74■□□□□ 0.91
VIMP08670 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VIMP08670 AL451085.2-201ENST00000605085 799 ntBASIC20.74■□□□□ 0.91
VIMP08670 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VIMP08670 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms