Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 AC007322.3-201ENST00000426526 701 ntBASIC20.31■□□□□ 0.84
LMX1AQ8TE12 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 MCRIP2P1-201ENST00000394346 511 ntBASIC20.3■□□□□ 0.84
LMX1AQ8TE12 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 AL589743.5-201ENST00000616611 1050 ntBASIC20.3■□□□□ 0.84
LMX1AQ8TE12 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1AQ8TE12 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1AQ8TE12 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 AC006058.3-201ENST00000606217 1069 ntBASIC20.28■□□□□ 0.84
LMX1AQ8TE12 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.28■□□□□ 0.84
LMX1AQ8TE12 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.27■□□□□ 0.84
LMX1AQ8TE12 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 AC093827.2-201ENST00000512654 315 ntBASIC20.27■□□□□ 0.84
LMX1AQ8TE12 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1AQ8TE12 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.27■□□□□ 0.83
LMX1AQ8TE12 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LMX1AQ8TE12 GUSBP5-202ENST00000510805 1989 ntBASIC20.26■□□□□ 0.83
LMX1AQ8TE12 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 AC233723.2-201ENST00000623798 2106 ntBASIC20.26■□□□□ 0.83
LMX1AQ8TE12 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 KRT18P68-201ENST00000392293 1000 ntBASIC20.26■□□□□ 0.83
LMX1AQ8TE12 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 UNC93B5-201ENST00000530315 699 ntBASIC20.26■□□□□ 0.83
LMX1AQ8TE12 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms