Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 CDCA4P2-201ENST00000441182 718 ntBASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 AC090192.1-201ENST00000517740 490 ntBASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 DUX4L16-201ENST00000555130 1264 ntBASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD1Q96NR3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD1Q96NR3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTCHD1Q96NR3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTCHD1Q96NR3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 AC026185.1-201ENST00000445748 174 ntBASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD1Q96NR3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 TERF1P5-201ENST00000477545 1207 ntBASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 AC231657.2-201ENST00000624556 255 ntBASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTCHD1Q96NR3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 AL137060.1-201ENST00000618151 2648 ntBASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 AC007322.1-201ENST00000426983 750 ntBASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD1Q96NR3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms