Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
YBX1P67809 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.34■□□□□ 0.85
YBX1P67809 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.34■□□□□ 0.85
YBX1P67809 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.34■□□□□ 0.85
YBX1P67809 AC104564.3-201ENST00000582367 638 ntBASIC20.34■□□□□ 0.85
YBX1P67809 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
YBX1P67809 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
YBX1P67809 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.34■□□□□ 0.85
YBX1P67809 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
YBX1P67809 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
YBX1P67809 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.33■□□□□ 0.85
YBX1P67809 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.33■□□□□ 0.85
YBX1P67809 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.33■□□□□ 0.85
YBX1P67809 AP001160.3-201ENST00000601484 763 ntBASIC20.33■□□□□ 0.85
YBX1P67809 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
YBX1P67809 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
YBX1P67809 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
YBX1P67809 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
YBX1P67809 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.33■□□□□ 0.84
YBX1P67809 AC061975.6-201ENST00000579045 1553 ntBASIC20.33■□□□□ 0.84
YBX1P67809 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
YBX1P67809 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
YBX1P67809 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.32■□□□□ 0.84
YBX1P67809 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.32■□□□□ 0.84
YBX1P67809 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.32■□□□□ 0.84
YBX1P67809 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.32■□□□□ 0.84
YBX1P67809 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.32■□□□□ 0.84
YBX1P67809 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.32■□□□□ 0.84
YBX1P67809 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.32■□□□□ 0.84
YBX1P67809 AC138907.5-202ENST00000569484 235 ntBASIC20.32■□□□□ 0.84
YBX1P67809 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
YBX1P67809 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
YBX1P67809 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.32■□□□□ 0.84
YBX1P67809 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
YBX1P67809 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.31■□□□□ 0.84
YBX1P67809 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
YBX1P67809 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
YBX1P67809 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.31■□□□□ 0.84
YBX1P67809 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.31■□□□□ 0.84
YBX1P67809 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.31■□□□□ 0.84
YBX1P67809 SLC7A5P2-201ENST00000553010 536 ntBASIC20.31■□□□□ 0.84
YBX1P67809 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 AC092437.1-201ENST00000624794 1048 ntBASIC20.31■□□□□ 0.84
YBX1P67809 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
YBX1P67809 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
YBX1P67809 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 AC010141.2-201ENST00000452426 721 ntBASIC20.3■□□□□ 0.84
YBX1P67809 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.3■□□□□ 0.84
YBX1P67809 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
YBX1P67809 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.3■□□□□ 0.84
YBX1P67809 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
YBX1P67809 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.29■□□□□ 0.84
YBX1P67809 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.29■□□□□ 0.84
YBX1P67809 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms