Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SHMT2P34897 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.39■□□□□ 0.85
SHMT2P34897 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.39■□□□□ 0.85
SHMT2P34897 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.39■□□□□ 0.85
SHMT2P34897 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.39■□□□□ 0.85
SHMT2P34897 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.39■□□□□ 0.85
SHMT2P34897 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
SHMT2P34897 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.38■□□□□ 0.85
SHMT2P34897 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SHMT2P34897 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.38■□□□□ 0.85
SHMT2P34897 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.38■□□□□ 0.85
SHMT2P34897 SLC7A5P1-201ENST00000568957 537 ntBASIC20.38■□□□□ 0.85
SHMT2P34897 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.38■□□□□ 0.85
SHMT2P34897 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.38■□□□□ 0.85
SHMT2P34897 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHMT2P34897 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 KRT16P2-201ENST00000414673 1423 ntBASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.37■□□□□ 0.85
SHMT2P34897 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
SHMT2P34897 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.37■□□□□ 0.85
SHMT2P34897 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.37■□□□□ 0.85
SHMT2P34897 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.37■□□□□ 0.85
SHMT2P34897 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.37■□□□□ 0.85
SHMT2P34897 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.37■□□□□ 0.85
SHMT2P34897 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.37■□□□□ 0.85
SHMT2P34897 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.37■□□□□ 0.85
SHMT2P34897 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHMT2P34897 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.37■□□□□ 0.85
SHMT2P34897 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SHMT2P34897 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
SHMT2P34897 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.36■□□□□ 0.85
SHMT2P34897 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.36■□□□□ 0.85
SHMT2P34897 SLC7A5P2-201ENST00000553010 536 ntBASIC20.36■□□□□ 0.85
SHMT2P34897 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.36■□□□□ 0.85
SHMT2P34897 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 AC061975.6-201ENST00000579045 1553 ntBASIC20.36■□□□□ 0.85
SHMT2P34897 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHMT2P34897 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHMT2P34897 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SHMT2P34897 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SHMT2P34897 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.35■□□□□ 0.85
SHMT2P34897 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.35■□□□□ 0.85
SHMT2P34897 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms