Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cdx1P18111 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Cdx1P18111 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.69□□□□□ -0.06
Cdx1P18111 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC14.69□□□□□ -0.06
Cdx1P18111 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx1P18111 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC14.68□□□□□ -0.06
Cdx1P18111 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Cdx1P18111 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Gm7160-202ENSMUST00000188519 1027 ntBASIC14.68□□□□□ -0.06
Cdx1P18111 Gm43173-201ENSMUST00000202246 593 ntBASIC14.68□□□□□ -0.06
Cdx1P18111 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Cdx1P18111 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx1P18111 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC14.67□□□□□ -0.06
Cdx1P18111 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC14.67□□□□□ -0.06
Cdx1P18111 Gm43530-201ENSMUST00000195920 274 ntBASIC14.67□□□□□ -0.06
Cdx1P18111 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Cdx1P18111 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC14.67□□□□□ -0.06
Cdx1P18111 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Cdx1P18111 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx1P18111 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 AC166356.1-201ENSMUST00000228236 1426 ntBASIC14.66□□□□□ -0.06
Cdx1P18111 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC14.66□□□□□ -0.06
Cdx1P18111 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Cdx1P18111 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Cdx1P18111 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Gm5874-201ENSMUST00000096101 508 ntBASIC14.66□□□□□ -0.06
Cdx1P18111 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 CT010478.1-201ENSMUST00000220747 2787 ntBASIC14.66□□□□□ -0.06
Cdx1P18111 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx1P18111 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Cdx1P18111 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdx1P18111 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Cdx1P18111 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC14.65□□□□□ -0.06
Cdx1P18111 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx1P18111 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms