Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.77■□□□□ 0.6
CPNE4Q96A23 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.77■□□□□ 0.6
CPNE4Q96A23 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.77■□□□□ 0.6
CPNE4Q96A23 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CPNE4Q96A23 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CPNE4Q96A23 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 MFSD11-216ENST00000590393 1141 ntBASIC18.76■□□□□ 0.59
CPNE4Q96A23 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CPNE4Q96A23 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CPNE4Q96A23 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.75■□□□□ 0.59
CPNE4Q96A23 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CPNE4Q96A23 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 AC080038.1-201ENST00000611274 1154 ntBASIC18.75■□□□□ 0.59
CPNE4Q96A23 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CPNE4Q96A23 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CPNE4Q96A23 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CPNE4Q96A23 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.75■□□□□ 0.59
CPNE4Q96A23 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.74■□□□□ 0.59
CPNE4Q96A23 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CPNE4Q96A23 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CPNE4Q96A23 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CPNE4Q96A23 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.74■□□□□ 0.59
CPNE4Q96A23 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 AC010536.3-201ENST00000620306 533 ntBASIC18.73■□□□□ 0.59
CPNE4Q96A23 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.73■□□□□ 0.59
CPNE4Q96A23 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CPNE4Q96A23 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.72■□□□□ 0.59
CPNE4Q96A23 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 AC245052.3-201ENST00000450182 901 ntBASIC18.72■□□□□ 0.59
CPNE4Q96A23 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.72■□□□□ 0.59
CPNE4Q96A23 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.72■□□□□ 0.59
CPNE4Q96A23 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CPNE4Q96A23 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms