Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC116Q8IYX3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CCDC116Q8IYX3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC116Q8IYX3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC116Q8IYX3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 AC008175.2-201ENST00000612840 297 ntBASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC116Q8IYX3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 AC138907.5-202ENST00000569484 235 ntBASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 AC104187.1-201ENST00000607510 612 ntBASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC116Q8IYX3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 AC019069.1-201ENST00000610008 1333 ntBASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 AP004607.4-201ENST00000530158 1459 ntBASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC116Q8IYX3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 AC097381.1-201ENST00000429019 1296 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L2-201ENST00000561772 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L6-201ENST00000626483 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L1-201ENST00000627662 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L8-201ENST00000629013 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L3-201ENST00000630187 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L7-201ENST00000630678 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DUX4L5-201ENST00000630834 1275 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 AC004854.2-201ENST00000608450 1441 ntBASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC116Q8IYX3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC116Q8IYX3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC116Q8IYX3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 POU5F1P4-201ENST00000413175 1085 ntBASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC116Q8IYX3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC116Q8IYX3 AP001160.3-201ENST00000601484 763 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms