Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 FEM1AP4-201ENST00000443167 1987 ntBASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP1AQ9HD42 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CHMP1AQ9HD42 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 AL034346.1-201ENST00000568244 1277 ntBASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 AC010525.1-201ENST00000585559 441 ntBASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 TRIR-205ENST00000592273 783 ntTSL 3 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP1AQ9HD42 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 OXCT2P1-201ENST00000447263 1535 ntBASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CHMP1AQ9HD42 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 AC007952.6-201ENST00000573168 2673 ntBASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 AC003957.1-201ENST00000625108 2673 ntBASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 SYT6-210ENST00000641643 1587 ntBASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP1AQ9HD42 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms