Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC33.02■■■□□ 2.88
VPS8Q8N3P4 AL162412.1-201ENST00000567129 965 ntBASIC33.02■■■□□ 2.88
VPS8Q8N3P4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC33.01■■■□□ 2.87
VPS8Q8N3P4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC33■■■□□ 2.87
VPS8Q8N3P4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC33■■■□□ 2.87
VPS8Q8N3P4 AC245052.3-201ENST00000450182 901 ntBASIC33■■■□□ 2.87
VPS8Q8N3P4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC33■■■□□ 2.87
VPS8Q8N3P4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC33■■■□□ 2.87
VPS8Q8N3P4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC33■■■□□ 2.87
VPS8Q8N3P4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 AC133552.2-202ENST00000575694 574 ntBASIC32.99■■■□□ 2.87
VPS8Q8N3P4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC32.99■■■□□ 2.87
VPS8Q8N3P4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
VPS8Q8N3P4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
VPS8Q8N3P4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 AC016405.3-201ENST00000607710 860 ntBASIC32.96■■■□□ 2.87
VPS8Q8N3P4 AL121832.2-201ENST00000610979 668 ntBASIC32.96■■■□□ 2.87
VPS8Q8N3P4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
VPS8Q8N3P4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 MARS-234ENST00000630571 216 ntTSL 5 BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 MARS-235ENST00000630803 183 ntTSL 3 BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC32.95■■■□□ 2.87
VPS8Q8N3P4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
VPS8Q8N3P4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.86
VPS8Q8N3P4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
VPS8Q8N3P4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 FBXW4P1-201ENST00000426721 2239 ntBASIC32.94■■■□□ 2.86
VPS8Q8N3P4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 TSPY6P-201ENST00000448518 926 ntBASIC32.94■■■□□ 2.86
VPS8Q8N3P4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC32.94■■■□□ 2.86
VPS8Q8N3P4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
VPS8Q8N3P4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
VPS8Q8N3P4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
VPS8Q8N3P4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC32.93■■■□□ 2.86
VPS8Q8N3P4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC32.92■■■□□ 2.86
VPS8Q8N3P4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC32.92■■■□□ 2.86
VPS8Q8N3P4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms