Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC010141.2-201ENST00000452426 721 ntBASIC24.74■■□□□ 1.55
HMGB1P09429 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.74■■□□□ 1.55
HMGB1P09429 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGB1P09429 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGB1P09429 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
HMGB1P09429 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
HMGB1P09429 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.74■■□□□ 1.55
HMGB1P09429 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
HMGB1P09429 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.73■■□□□ 1.55
HMGB1P09429 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGB1P09429 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC24.73■■□□□ 1.55
HMGB1P09429 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.73■■□□□ 1.55
HMGB1P09429 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24.73■■□□□ 1.55
HMGB1P09429 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.73■■□□□ 1.55
HMGB1P09429 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGB1P09429 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
HMGB1P09429 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
HMGB1P09429 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
HMGB1P09429 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
HMGB1P09429 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
HMGB1P09429 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.72■■□□□ 1.55
HMGB1P09429 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L2-201ENST00000561772 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.72■■□□□ 1.55
HMGB1P09429 AC104187.1-201ENST00000607510 612 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L6-201ENST00000626483 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L1-201ENST00000627662 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L8-201ENST00000629013 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L3-201ENST00000630187 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L7-201ENST00000630678 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 DUX4L5-201ENST00000630834 1275 ntBASIC24.72■■□□□ 1.55
HMGB1P09429 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGB1P09429 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.71■■□□□ 1.55
HMGB1P09429 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.71■■□□□ 1.55
HMGB1P09429 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.71■■□□□ 1.55
HMGB1P09429 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.71■■□□□ 1.55
HMGB1P09429 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
HMGB1P09429 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGB1P09429 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.55
HMGB1P09429 KRT16P2-201ENST00000414673 1423 ntBASIC24.7■■□□□ 1.55
HMGB1P09429 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGB1P09429 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGB1P09429 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.7■■□□□ 1.54
HMGB1P09429 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.7■■□□□ 1.54
HMGB1P09429 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.7■■□□□ 1.54
HMGB1P09429 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.7■■□□□ 1.54
HMGB1P09429 AC120498.10-201ENST00000621827 505 ntBASIC24.7■■□□□ 1.54
HMGB1P09429 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC24.7■■□□□ 1.54
HMGB1P09429 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGB1P09429 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGB1P09429 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
HMGB1P09429 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.69■■□□□ 1.54
HMGB1P09429 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.69■■□□□ 1.54
HMGB1P09429 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC24.69■■□□□ 1.54
HMGB1P09429 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGB1P09429 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
HMGB1P09429 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGB1P09429 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 AC097381.1-201ENST00000429019 1296 ntBASIC24.68■■□□□ 1.54
HMGB1P09429 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGB1P09429 AP001160.3-201ENST00000601484 763 ntBASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms