Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC15.3■□□□□ 0.04
Hmgb3O54879 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Hmgb3O54879 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Hmgb3O54879 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Gm32699-201ENSMUST00000221728 1988 ntBASIC15.29■□□□□ 0.04
Hmgb3O54879 Gm45141-201ENSMUST00000206502 1888 ntBASIC15.29■□□□□ 0.04
Hmgb3O54879 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Hmgb3O54879 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC15.29■□□□□ 0.04
Hmgb3O54879 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC15.29■□□□□ 0.04
Hmgb3O54879 Gm5921-201ENSMUST00000075898 882 ntBASIC15.29■□□□□ 0.04
Hmgb3O54879 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Hmgb3O54879 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hmgb3O54879 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Hmgb3O54879 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hmgb3O54879 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hmgb3O54879 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Hmgb3O54879 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hmgb3O54879 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hmgb3O54879 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC15.27■□□□□ 0.04
Hmgb3O54879 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC15.27■□□□□ 0.04
Hmgb3O54879 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC15.27■□□□□ 0.04
Hmgb3O54879 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hmgb3O54879 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Hmgb3O54879 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Hmgb3O54879 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.27■□□□□ 0.03
Hmgb3O54879 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Hmgb3O54879 Gm37811-201ENSMUST00000192416 2601 ntBASIC15.27■□□□□ 0.03
Hmgb3O54879 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Hmgb3O54879 AC154266.1-201ENSMUST00000223190 503 ntBASIC15.26■□□□□ 0.03
Hmgb3O54879 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Hmgb3O54879 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Hmgb3O54879 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Hmgb3O54879 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Hmgb3O54879 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hmgb3O54879 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Hmgb3O54879 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Hmgb3O54879 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Hmgb3O54879 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Hmgb3O54879 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC15.25■□□□□ 0.03
Hmgb3O54879 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Hmgb3O54879 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Hmgb3O54879 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC15.25■□□□□ 0.03
Hmgb3O54879 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms