Protein–RNA interactions for Protein: Q99PP7

Trim33, E3 ubiquitin-protein ligase TRIM33, mousemouse

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim33Q99PP7 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Trim33Q99PP7 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trim33Q99PP7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
Trim33Q99PP7 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim33Q99PP7 Gm9397-201ENSMUST00000200125 605 ntBASIC24.32■■□□□ 1.48
Trim33Q99PP7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim33Q99PP7 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Trim33Q99PP7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trim33Q99PP7 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim33Q99PP7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.28■■□□□ 1.48
Trim33Q99PP7 Gm45855-201ENSMUST00000212546 880 ntBASIC24.27■■□□□ 1.48
Trim33Q99PP7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Trim33Q99PP7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trim33Q99PP7 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim33Q99PP7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim33Q99PP7 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Trim33Q99PP7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim33Q99PP7 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC24.19■■□□□ 1.46
Trim33Q99PP7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Trim33Q99PP7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Trim33Q99PP7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim33Q99PP7 Gm24970-201ENSMUST00000175582 82 ntBASIC24.15■■□□□ 1.46
Trim33Q99PP7 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.15■■□□□ 1.46
Trim33Q99PP7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim33Q99PP7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim33Q99PP7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim33Q99PP7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.14■■□□□ 1.45
Trim33Q99PP7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim33Q99PP7 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim33Q99PP7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Trim33Q99PP7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Trim33Q99PP7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim33Q99PP7 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.08■■□□□ 1.45
Trim33Q99PP7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.08■■□□□ 1.45
Trim33Q99PP7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
Trim33Q99PP7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trim33Q99PP7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24.06■■□□□ 1.44
Trim33Q99PP7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim33Q99PP7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Trim33Q99PP7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim33Q99PP7 AC157572.2-201ENSMUST00000226970 908 ntBASIC24.03■■□□□ 1.44
Trim33Q99PP7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.02■■□□□ 1.44
Trim33Q99PP7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim33Q99PP7 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim33Q99PP7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim33Q99PP7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.97■■□□□ 1.43
Trim33Q99PP7 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.97■■□□□ 1.43
Trim33Q99PP7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.96■■□□□ 1.43
Trim33Q99PP7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.95■■□□□ 1.42
Trim33Q99PP7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim33Q99PP7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim33Q99PP7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.93■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms