Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Vps39Q8R5L3 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Vps39Q8R5L3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
Vps39Q8R5L3 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Vps39Q8R5L3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Vps39Q8R5L3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.7■■□□□ 1.54
Vps39Q8R5L3 Amer2-203ENSMUST00000225247 2662 ntBASIC24.69■■□□□ 1.54
Vps39Q8R5L3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Vps39Q8R5L3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Vps39Q8R5L3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Vps39Q8R5L3 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
Vps39Q8R5L3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Vps39Q8R5L3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Vps39Q8R5L3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Vps39Q8R5L3 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Vps39Q8R5L3 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Vps39Q8R5L3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Vps39Q8R5L3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
Vps39Q8R5L3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.63■■□□□ 1.53
Vps39Q8R5L3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
Vps39Q8R5L3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
Vps39Q8R5L3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Vps39Q8R5L3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Vps39Q8R5L3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC24.61■■□□□ 1.53
Vps39Q8R5L3 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Vps39Q8R5L3 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
Vps39Q8R5L3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Vps39Q8R5L3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Vps39Q8R5L3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24.6■■□□□ 1.53
Vps39Q8R5L3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Vps39Q8R5L3 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Vps39Q8R5L3 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Vps39Q8R5L3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Vps39Q8R5L3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Vps39Q8R5L3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Vps39Q8R5L3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Vps39Q8R5L3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Vps39Q8R5L3 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Vps39Q8R5L3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Vps39Q8R5L3 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Vps39Q8R5L3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC24.55■■□□□ 1.52
Vps39Q8R5L3 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Vps39Q8R5L3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Vps39Q8R5L3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Vps39Q8R5L3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Vps39Q8R5L3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC24.52■■□□□ 1.52
Vps39Q8R5L3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Vps39Q8R5L3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
Vps39Q8R5L3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Vps39Q8R5L3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Vps39Q8R5L3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Vps39Q8R5L3 Fezf2-202ENSMUST00000224023 1917 ntBASIC24.47■■□□□ 1.51
Vps39Q8R5L3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC24.46■■□□□ 1.51
Vps39Q8R5L3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps39Q8R5L3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Vps39Q8R5L3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Vps39Q8R5L3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Vps39Q8R5L3 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Vps39Q8R5L3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Vps39Q8R5L3 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps39Q8R5L3 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps39Q8R5L3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps39Q8R5L3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps39Q8R5L3 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps39Q8R5L3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps39Q8R5L3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps39Q8R5L3 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Vps39Q8R5L3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps39Q8R5L3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC24.39■■□□□ 1.5
Vps39Q8R5L3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps39Q8R5L3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Vps39Q8R5L3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Vps39Q8R5L3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Vps39Q8R5L3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Vps39Q8R5L3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Vps39Q8R5L3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Vps39Q8R5L3 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Vps39Q8R5L3 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Vps39Q8R5L3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Vps39Q8R5L3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Vps39Q8R5L3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Vps39Q8R5L3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Vps39Q8R5L3 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms