Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Rpp40Q8R1F9 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
Rpp40Q8R1F9 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.98■■□□□ 1.91
Rpp40Q8R1F9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.97■■□□□ 1.91
Rpp40Q8R1F9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Rpp40Q8R1F9 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Rpp40Q8R1F9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Rpp40Q8R1F9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.95■■□□□ 1.9
Rpp40Q8R1F9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Rpp40Q8R1F9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.94■■□□□ 1.9
Rpp40Q8R1F9 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Rpp40Q8R1F9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Rpp40Q8R1F9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Rpp40Q8R1F9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
Rpp40Q8R1F9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
Rpp40Q8R1F9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Rpp40Q8R1F9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Rpp40Q8R1F9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.91■■□□□ 1.9
Rpp40Q8R1F9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Rpp40Q8R1F9 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Rpp40Q8R1F9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Rpp40Q8R1F9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Rpp40Q8R1F9 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Rpp40Q8R1F9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.88■■□□□ 1.89
Rpp40Q8R1F9 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.87■■□□□ 1.89
Rpp40Q8R1F9 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
Rpp40Q8R1F9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Rpp40Q8R1F9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Rpp40Q8R1F9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Rpp40Q8R1F9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
Rpp40Q8R1F9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Rpp40Q8R1F9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Rpp40Q8R1F9 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Rpp40Q8R1F9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
Rpp40Q8R1F9 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Rpp40Q8R1F9 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.82■■□□□ 1.88
Rpp40Q8R1F9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Rpp40Q8R1F9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Rpp40Q8R1F9 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Rpp40Q8R1F9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Rpp40Q8R1F9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Rpp40Q8R1F9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Rpp40Q8R1F9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Rpp40Q8R1F9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Rpp40Q8R1F9 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Rpp40Q8R1F9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
Rpp40Q8R1F9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Rpp40Q8R1F9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.75■■□□□ 1.87
Rpp40Q8R1F9 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
Rpp40Q8R1F9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
Rpp40Q8R1F9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Rpp40Q8R1F9 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.73■■□□□ 1.87
Rpp40Q8R1F9 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Rpp40Q8R1F9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Rpp40Q8R1F9 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.69■■□□□ 1.86
Rpp40Q8R1F9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Rpp40Q8R1F9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
Rpp40Q8R1F9 Zxda-201ENSMUST00000117281 2621 ntBASIC26.68■■□□□ 1.86
Rpp40Q8R1F9 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Rpp40Q8R1F9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Rpp40Q8R1F9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Rpp40Q8R1F9 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.65■■□□□ 1.86
Rpp40Q8R1F9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.65■■□□□ 1.86
Rpp40Q8R1F9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.65■■□□□ 1.86
Rpp40Q8R1F9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Rpp40Q8R1F9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Rpp40Q8R1F9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
Rpp40Q8R1F9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Rpp40Q8R1F9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.62■■□□□ 1.85
Rpp40Q8R1F9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.61■■□□□ 1.85
Rpp40Q8R1F9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.6■■□□□ 1.85
Rpp40Q8R1F9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Rpp40Q8R1F9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Rpp40Q8R1F9 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Rpp40Q8R1F9 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Rpp40Q8R1F9 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.57■■□□□ 1.84
Rpp40Q8R1F9 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Rpp40Q8R1F9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Rpp40Q8R1F9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.55■■□□□ 1.84
Rpp40Q8R1F9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Rpp40Q8R1F9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
Rpp40Q8R1F9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.53■■□□□ 1.84
Rpp40Q8R1F9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
Rpp40Q8R1F9 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
Rpp40Q8R1F9 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Rpp40Q8R1F9 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Rpp40Q8R1F9 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.5■■□□□ 1.83
Rpp40Q8R1F9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Rpp40Q8R1F9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Rpp40Q8R1F9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.49■■□□□ 1.83
Rpp40Q8R1F9 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Rpp40Q8R1F9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Rpp40Q8R1F9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Rpp40Q8R1F9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Rpp40Q8R1F9 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Rpp40Q8R1F9 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Rpp40Q8R1F9 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.45■■□□□ 1.82
Rpp40Q8R1F9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Rpp40Q8R1F9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Rpp40Q8R1F9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.43■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms