Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav8d-1Q5R1H8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.93■□□□□ 0.78
Trav8d-1Q5R1H8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav8d-1Q5R1H8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Trav8d-1Q5R1H8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trav8d-1Q5R1H8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav8d-1Q5R1H8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav8d-1Q5R1H8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav8d-1Q5R1H8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav8d-1Q5R1H8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.9■□□□□ 0.78
Trav8d-1Q5R1H8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav8d-1Q5R1H8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trav8d-1Q5R1H8 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav8d-1Q5R1H8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav8d-1Q5R1H8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav8d-1Q5R1H8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8d-1Q5R1H8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8d-1Q5R1H8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8d-1Q5R1H8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8d-1Q5R1H8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8d-1Q5R1H8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav8d-1Q5R1H8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav8d-1Q5R1H8 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.87■□□□□ 0.77
Trav8d-1Q5R1H8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trav8d-1Q5R1H8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Trav8d-1Q5R1H8 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav8d-1Q5R1H8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trav8d-1Q5R1H8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav8d-1Q5R1H8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trav8d-1Q5R1H8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.83■□□□□ 0.77
Trav8d-1Q5R1H8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trav8d-1Q5R1H8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav8d-1Q5R1H8 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav8d-1Q5R1H8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav8d-1Q5R1H8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Trav8d-1Q5R1H8 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav8d-1Q5R1H8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trav8d-1Q5R1H8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav8d-1Q5R1H8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Trav8d-1Q5R1H8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav8d-1Q5R1H8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav8d-1Q5R1H8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav8d-1Q5R1H8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trav8d-1Q5R1H8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trav8d-1Q5R1H8 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav8d-1Q5R1H8 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav8d-1Q5R1H8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.77■□□□□ 0.76
Trav8d-1Q5R1H8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trav8d-1Q5R1H8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trav8d-1Q5R1H8 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav8d-1Q5R1H8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav8d-1Q5R1H8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav8d-1Q5R1H8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Trav8d-1Q5R1H8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trav8d-1Q5R1H8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav8d-1Q5R1H8 Peli2-204ENSMUST00000226513 1320 ntBASIC19.72■□□□□ 0.75
Trav8d-1Q5R1H8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-1Q5R1H8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trav8d-1Q5R1H8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-1Q5R1H8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-1Q5R1H8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-1Q5R1H8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-1Q5R1H8 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-1Q5R1H8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-1Q5R1H8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav8d-1Q5R1H8 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav8d-1Q5R1H8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-1Q5R1H8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-1Q5R1H8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-1Q5R1H8 Gm16148-201ENSMUST00000119653 893 ntBASIC19.67■□□□□ 0.74
Trav8d-1Q5R1H8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trav8d-1Q5R1H8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
Trav8d-1Q5R1H8 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-1Q5R1H8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-1Q5R1H8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.65■□□□□ 0.74
Trav8d-1Q5R1H8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-1Q5R1H8 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Trav8d-1Q5R1H8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav8d-1Q5R1H8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
Trav8d-1Q5R1H8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trav8d-1Q5R1H8 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-1Q5R1H8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Trav8d-1Q5R1H8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav8d-1Q5R1H8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Trav8d-1Q5R1H8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav8d-1Q5R1H8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav8d-1Q5R1H8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
Trav8d-1Q5R1H8 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav8d-1Q5R1H8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms