Protein–RNA interactions for Protein: Q4VGL6

Rc3h1, Roquin-1, mousemouse

Known RBP Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1Q4VGL6 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
Rc3h1Q4VGL6 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Rc3h1Q4VGL6 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Rc3h1Q4VGL6 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29.23■■■□□ 2.27
Rc3h1Q4VGL6 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Rc3h1Q4VGL6 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
Rc3h1Q4VGL6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Rc3h1Q4VGL6 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
Rc3h1Q4VGL6 AC157572.2-201ENSMUST00000226970 908 ntBASIC29.2■■■□□ 2.26
Rc3h1Q4VGL6 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Rc3h1Q4VGL6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Rc3h1Q4VGL6 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Rc3h1Q4VGL6 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Rc3h1Q4VGL6 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Rc3h1Q4VGL6 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Rc3h1Q4VGL6 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Rc3h1Q4VGL6 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
Rc3h1Q4VGL6 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Rc3h1Q4VGL6 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
Rc3h1Q4VGL6 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.26
Rc3h1Q4VGL6 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Rc3h1Q4VGL6 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
Rc3h1Q4VGL6 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
Rc3h1Q4VGL6 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC29.12■■■□□ 2.25
Rc3h1Q4VGL6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Rc3h1Q4VGL6 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Rc3h1Q4VGL6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Rc3h1Q4VGL6 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rc3h1Q4VGL6 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rc3h1Q4VGL6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Rc3h1Q4VGL6 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Rc3h1Q4VGL6 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
Rc3h1Q4VGL6 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Rc3h1Q4VGL6 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC29.07■■■□□ 2.24
Rc3h1Q4VGL6 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Rc3h1Q4VGL6 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rc3h1Q4VGL6 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC29.06■■■□□ 2.24
Rc3h1Q4VGL6 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.05■■■□□ 2.24
Rc3h1Q4VGL6 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Rc3h1Q4VGL6 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Rc3h1Q4VGL6 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Rc3h1Q4VGL6 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Rc3h1Q4VGL6 Gm9939-201ENSMUST00000067161 1154 ntBASIC29■■■□□ 2.23
Rc3h1Q4VGL6 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29■■■□□ 2.23
Rc3h1Q4VGL6 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Rc3h1Q4VGL6 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.99■■■□□ 2.23
Rc3h1Q4VGL6 Gm6345-201ENSMUST00000180378 1691 ntBASIC28.98■■■□□ 2.23
Rc3h1Q4VGL6 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Rc3h1Q4VGL6 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
Rc3h1Q4VGL6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC28.96■■■□□ 2.23
Rc3h1Q4VGL6 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.96■■■□□ 2.23
Rc3h1Q4VGL6 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.23
Rc3h1Q4VGL6 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Rc3h1Q4VGL6 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Rc3h1Q4VGL6 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Rc3h1Q4VGL6 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Rc3h1Q4VGL6 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Rc3h1Q4VGL6 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Rc3h1Q4VGL6 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
Rc3h1Q4VGL6 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Rc3h1Q4VGL6 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Rc3h1Q4VGL6 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Rc3h1Q4VGL6 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Rc3h1Q4VGL6 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
Rc3h1Q4VGL6 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
Rc3h1Q4VGL6 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28.84■■■□□ 2.21
Rc3h1Q4VGL6 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Rc3h1Q4VGL6 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rc3h1Q4VGL6 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rc3h1Q4VGL6 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Rc3h1Q4VGL6 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Rc3h1Q4VGL6 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.8■■■□□ 2.2
Rc3h1Q4VGL6 Gm42809-201ENSMUST00000198429 1138 ntBASIC28.8■■■□□ 2.2
Rc3h1Q4VGL6 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
Rc3h1Q4VGL6 Gm6821-201ENSMUST00000107540 542 ntBASIC28.79■■■□□ 2.2
Rc3h1Q4VGL6 Gm8503-201ENSMUST00000118131 455 ntBASIC28.79■■■□□ 2.2
Rc3h1Q4VGL6 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Rc3h1Q4VGL6 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Rc3h1Q4VGL6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Rc3h1Q4VGL6 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Rc3h1Q4VGL6 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Rc3h1Q4VGL6 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.75■■■□□ 2.19
Rc3h1Q4VGL6 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Rc3h1Q4VGL6 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Rc3h1Q4VGL6 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Rc3h1Q4VGL6 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC28.74■■■□□ 2.19
Rc3h1Q4VGL6 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
Rc3h1Q4VGL6 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.73■■■□□ 2.19
Rc3h1Q4VGL6 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC28.73■■■□□ 2.19
Rc3h1Q4VGL6 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Rc3h1Q4VGL6 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.19
Rc3h1Q4VGL6 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Rc3h1Q4VGL6 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Rc3h1Q4VGL6 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC28.67■■■□□ 2.18
Rc3h1Q4VGL6 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
Rc3h1Q4VGL6 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC28.67■■■□□ 2.18
Rc3h1Q4VGL6 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Rc3h1Q4VGL6 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC28.66■■■□□ 2.18
Rc3h1Q4VGL6 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
Rc3h1Q4VGL6 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC28.65■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms