Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cdx1P18111 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cdx1P18111 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cdx1P18111 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Cdx1P18111 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cdx1P18111 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cdx1P18111 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Cdx1P18111 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Cdx1P18111 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cdx1P18111 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cdx1P18111 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cdx1P18111 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cdx1P18111 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cdx1P18111 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cdx1P18111 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cdx1P18111 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx1P18111 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx1P18111 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx1P18111 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx1P18111 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Cdx1P18111 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx1P18111 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx1P18111 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Cdx1P18111 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx1P18111 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdx1P18111 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Cdx1P18111 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx1P18111 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx1P18111 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx1P18111 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx1P18111 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx1P18111 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx1P18111 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx1P18111 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx1P18111 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx1P18111 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx1P18111 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx1P18111 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx1P18111 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Cdx1P18111 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Cdx1P18111 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC19.38■□□□□ 0.69
Cdx1P18111 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cdx1P18111 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cdx1P18111 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Cdx1P18111 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cdx1P18111 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Cdx1P18111 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdx1P18111 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdx1P18111 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cdx1P18111 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Cdx1P18111 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdx1P18111 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdx1P18111 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdx1P18111 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cdx1P18111 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.34■□□□□ 0.69
Cdx1P18111 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC19.34■□□□□ 0.69
Cdx1P18111 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Cdx1P18111 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cdx1P18111 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cdx1P18111 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.33■□□□□ 0.69
Cdx1P18111 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cdx1P18111 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.32■□□□□ 0.68
Cdx1P18111 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.32■□□□□ 0.68
Cdx1P18111 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Cdx1P18111 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdx1P18111 Gm16148-201ENSMUST00000119653 893 ntBASIC19.32■□□□□ 0.68
Cdx1P18111 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdx1P18111 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdx1P18111 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdx1P18111 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Cdx1P18111 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdx1P18111 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdx1P18111 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdx1P18111 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Cdx1P18111 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdx1P18111 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Cdx1P18111 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdx1P18111 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cdx1P18111 Zfp131-207ENSMUST00000224946 1783 ntBASIC19.29■□□□□ 0.68
Cdx1P18111 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdx1P18111 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cdx1P18111 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.28■□□□□ 0.68
Cdx1P18111 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cdx1P18111 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cdx1P18111 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cdx1P18111 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cdx1P18111 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdx1P18111 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdx1P18111 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Cdx1P18111 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cdx1P18111 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.24■□□□□ 0.67
Cdx1P18111 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Cdx1P18111 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Cdx1P18111 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdx1P18111 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdx1P18111 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdx1P18111 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Cdx1P18111 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cdx1P18111 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cdx1P18111 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms