Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 AC013268.1-206ENST00000638368 961 ntBASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 AC112229.1-201ENST00000639295 961 ntBASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.17■■□□□ 1.46
PCDHA1Q9Y5I3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 AC005181.1-201ENST00000604782 1256 ntBASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
PCDHA1Q9Y5I3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA1Q9Y5I3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
PCDHA1Q9Y5I3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.14■■□□□ 1.46
PCDHA1Q9Y5I3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHA1Q9Y5I3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.14■■□□□ 1.46
PCDHA1Q9Y5I3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 HLA-L-209ENST00000420110 1011 ntBASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 AL050303.2-201ENST00000619798 666 ntBASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
PCDHA1Q9Y5I3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 RBM17P2-201ENST00000616397 1405 ntBASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 NCF1B-203ENST00000435988 1254 ntBASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA1Q9Y5I3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA1Q9Y5I3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA1Q9Y5I3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 AC007322.4-201ENST00000509611 723 ntBASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA1Q9Y5I3 AC068338.2-201ENST00000563278 1430 ntBASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms