Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 MIR939-201ENST00000401314 82 ntBASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 RASA4CP-201ENST00000424092 1398 ntBASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 AL136967.2-201ENST00000623968 743 ntBASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDD3Q9Y3P4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 AC104564.3-201ENST00000582367 638 ntBASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.35■□□□□ 0.53
RHBDD3Q9Y3P4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 AC091305.1-201ENST00000479476 895 ntBASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.34■□□□□ 0.53
RHBDD3Q9Y3P4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDD3Q9Y3P4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDD3Q9Y3P4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 SUDS3P1-201ENST00000505831 966 ntBASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 AC105233.4-201ENST00000642045 216 ntBASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 AC003102.1-202ENST00000563394 1796 ntBASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDD3Q9Y3P4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.31■□□□□ 0.52
RHBDD3Q9Y3P4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
RHBDD3Q9Y3P4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RHBDD3Q9Y3P4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RHBDD3Q9Y3P4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms