Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 AC013268.1-206ENST00000638368 961 ntBASIC22.53■■□□□ 1.2
ZNF560Q96MR9 AC112229.1-201ENST00000639295 961 ntBASIC22.53■■□□□ 1.2
ZNF560Q96MR9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
ZNF560Q96MR9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 AC007322.1-201ENST00000426983 750 ntBASIC22.52■■□□□ 1.2
ZNF560Q96MR9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 TERF1P5-201ENST00000477545 1207 ntBASIC22.52■■□□□ 1.2
ZNF560Q96MR9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
ZNF560Q96MR9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.52■■□□□ 1.19
ZNF560Q96MR9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 EP400NL-214ENST00000641289 2402 ntBASIC22.51■■□□□ 1.19
ZNF560Q96MR9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.51■■□□□ 1.19
ZNF560Q96MR9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 MIR663A-201ENST00000385250 93 ntBASIC22.5■■□□□ 1.19
ZNF560Q96MR9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 AC006970.2-201ENST00000450065 779 ntBASIC22.5■■□□□ 1.19
ZNF560Q96MR9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ZNF560Q96MR9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.49■■□□□ 1.19
ZNF560Q96MR9 AC007322.4-201ENST00000509611 723 ntBASIC22.49■■□□□ 1.19
ZNF560Q96MR9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 AC243732.1-201ENST00000612648 864 ntBASIC22.49■■□□□ 1.19
ZNF560Q96MR9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
ZNF560Q96MR9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 CNN2P6-201ENST00000439038 900 ntBASIC22.48■■□□□ 1.19
ZNF560Q96MR9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
ZNF560Q96MR9 RBM17P2-201ENST00000616397 1405 ntBASIC22.48■■□□□ 1.19
ZNF560Q96MR9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.47■■□□□ 1.19
ZNF560Q96MR9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
ZNF560Q96MR9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
ZNF560Q96MR9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
ZNF560Q96MR9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms