Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 AC061975.6-201ENST00000579045 1553 ntBASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.49■■□□□ 1.03
SHROOM3Q8TF72 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 AC066615.1-201ENST00000640911 628 ntBASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SHROOM3Q8TF72 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 KRT19P1-201ENST00000405746 1186 ntBASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.47■■□□□ 1.03
SHROOM3Q8TF72 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 AC005229.4-201ENST00000610085 2198 ntBASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 AC010141.2-201ENST00000452426 721 ntBASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.46■■□□□ 1.03
SHROOM3Q8TF72 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
SHROOM3Q8TF72 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SHROOM3Q8TF72 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 UBE2DNL-204ENST00000602536 740 ntBASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.45■■□□□ 1.02
SHROOM3Q8TF72 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.44■■□□□ 1.02
SHROOM3Q8TF72 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms