Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Vti1aO89116 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Vti1aO89116 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.88■□□□□ 0.77
Vti1aO89116 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vti1aO89116 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Vti1aO89116 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Vti1aO89116 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Vti1aO89116 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Vti1aO89116 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.87■□□□□ 0.77
Vti1aO89116 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.87■□□□□ 0.77
Vti1aO89116 Gm27275-201ENSMUST00000184318 272 ntBASIC19.87■□□□□ 0.77
Vti1aO89116 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.87■□□□□ 0.77
Vti1aO89116 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.87■□□□□ 0.77
Vti1aO89116 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vti1aO89116 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.86■□□□□ 0.77
Vti1aO89116 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.86■□□□□ 0.77
Vti1aO89116 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.86■□□□□ 0.77
Vti1aO89116 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Vti1aO89116 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.86■□□□□ 0.77
Vti1aO89116 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Vti1aO89116 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Vti1aO89116 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vti1aO89116 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vti1aO89116 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.85■□□□□ 0.77
Vti1aO89116 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vti1aO89116 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vti1aO89116 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vti1aO89116 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Vti1aO89116 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Vti1aO89116 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vti1aO89116 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vti1aO89116 Mir6982-201ENSMUST00000184354 68 ntBASIC19.84■□□□□ 0.77
Vti1aO89116 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.84■□□□□ 0.77
Vti1aO89116 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Vti1aO89116 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Vti1aO89116 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Vti1aO89116 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vti1aO89116 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vti1aO89116 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vti1aO89116 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Vti1aO89116 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Vti1aO89116 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Vti1aO89116 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.83■□□□□ 0.77
Vti1aO89116 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Gm2559-201ENSMUST00000201323 363 ntBASIC19.83■□□□□ 0.77
Vti1aO89116 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Vti1aO89116 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vti1aO89116 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.83■□□□□ 0.76
Vti1aO89116 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vti1aO89116 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Vti1aO89116 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Vti1aO89116 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Vti1aO89116 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.82■□□□□ 0.76
Vti1aO89116 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.82■□□□□ 0.76
Vti1aO89116 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.82■□□□□ 0.76
Vti1aO89116 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vti1aO89116 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms