Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.46■□□□□ 0.55
LMX1BO60663 MIR6084-201ENST00000622012 110 ntBASIC18.46■□□□□ 0.55
LMX1BO60663 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.46■□□□□ 0.55
LMX1BO60663 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LMX1BO60663 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.45■□□□□ 0.54
LMX1BO60663 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.45■□□□□ 0.54
LMX1BO60663 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.45■□□□□ 0.54
LMX1BO60663 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LMX1BO60663 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.45■□□□□ 0.54
LMX1BO60663 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.45■□□□□ 0.54
LMX1BO60663 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LMX1BO60663 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
LMX1BO60663 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LMX1BO60663 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
LMX1BO60663 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1BO60663 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1BO60663 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1BO60663 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.44■□□□□ 0.54
LMX1BO60663 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
LMX1BO60663 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.44■□□□□ 0.54
LMX1BO60663 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.44■□□□□ 0.54
LMX1BO60663 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.44■□□□□ 0.54
LMX1BO60663 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1BO60663 AC073130.3-201ENST00000624389 2278 ntBASIC18.44■□□□□ 0.54
LMX1BO60663 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1BO60663 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1BO60663 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1BO60663 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LMX1BO60663 ID1-201ENST00000376105 1233 ntBASIC18.43■□□□□ 0.54
LMX1BO60663 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LMX1BO60663 CCDC92B-201ENST00000575506 885 ntBASIC18.43■□□□□ 0.54
LMX1BO60663 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.43■□□□□ 0.54
LMX1BO60663 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1BO60663 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.43■□□□□ 0.54
LMX1BO60663 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 SLC25A24-204ENST00000569674 2357 ntBASIC18.42■□□□□ 0.54
LMX1BO60663 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
LMX1BO60663 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LMX1BO60663 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.42■□□□□ 0.54
LMX1BO60663 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.42■□□□□ 0.54
LMX1BO60663 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 NTF6G-201ENST00000591094 616 ntBASIC18.42■□□□□ 0.54
LMX1BO60663 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LMX1BO60663 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1BO60663 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
LMX1BO60663 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1BO60663 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1BO60663 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1BO60663 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
LMX1BO60663 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1BO60663 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.41■□□□□ 0.54
LMX1BO60663 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.41■□□□□ 0.54
LMX1BO60663 AP005435.1-201ENST00000529293 1178 ntBASIC18.41■□□□□ 0.54
LMX1BO60663 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1BO60663 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1BO60663 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.41■□□□□ 0.54
LMX1BO60663 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1BO60663 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.41■□□□□ 0.54
LMX1BO60663 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LMX1BO60663 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1BO60663 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
LMX1BO60663 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1BO60663 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.4■□□□□ 0.54
LMX1BO60663 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.4■□□□□ 0.54
LMX1BO60663 KRT18P14-201ENST00000534205 1250 ntBASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms