Protein–RNA interactions for Protein: Q91XX8

Pcdhgb1, Protocadherin gamma B1, mousemouse

Predictions only

Length 918 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb1Q91XX8 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb1Q91XX8 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Gm20760-201ENSMUST00000179197 648 ntBASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb1Q91XX8 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Gm37856-201ENSMUST00000191634 999 ntBASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb1Q91XX8 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb1Q91XX8 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb1Q91XX8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb1Q91XX8 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms