Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX2-1P43699 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.22■□□□□ 0.35
NKX2-1P43699 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX2-1P43699 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX2-1P43699 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX2-1P43699 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
NKX2-1P43699 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
NKX2-1P43699 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.21■□□□□ 0.35
NKX2-1P43699 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.21■□□□□ 0.35
NKX2-1P43699 AC021242.3-201ENST00000607598 1377 ntBASIC17.21■□□□□ 0.35
NKX2-1P43699 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC17.21■□□□□ 0.35
NKX2-1P43699 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 AC103724.3-201ENST00000564481 992 ntBASIC17.21■□□□□ 0.35
NKX2-1P43699 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.21■□□□□ 0.35
NKX2-1P43699 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.21■□□□□ 0.35
NKX2-1P43699 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NKX2-1P43699 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX2-1P43699 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
NKX2-1P43699 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
NKX2-1P43699 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.21■□□□□ 0.34
NKX2-1P43699 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
NKX2-1P43699 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
NKX2-1P43699 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
NKX2-1P43699 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
NKX2-1P43699 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
NKX2-1P43699 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.2■□□□□ 0.34
NKX2-1P43699 AP005212.1-201ENST00000581547 1997 ntBASIC17.2■□□□□ 0.34
NKX2-1P43699 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX2-1P43699 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
NKX2-1P43699 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 AC103834.1-201ENST00000520383 144 ntBASIC17.19■□□□□ 0.34
NKX2-1P43699 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.19■□□□□ 0.34
NKX2-1P43699 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC17.19■□□□□ 0.34
NKX2-1P43699 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX2-1P43699 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
NKX2-1P43699 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.19■□□□□ 0.34
NKX2-1P43699 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.19■□□□□ 0.34
NKX2-1P43699 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
NKX2-1P43699 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.18■□□□□ 0.34
NKX2-1P43699 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
NKX2-1P43699 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.18■□□□□ 0.34
NKX2-1P43699 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.18■□□□□ 0.34
NKX2-1P43699 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 KRT8P33-201ENST00000508125 1423 ntBASIC17.18■□□□□ 0.34
NKX2-1P43699 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-1P43699 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
NKX2-1P43699 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.18■□□□□ 0.34
NKX2-1P43699 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 AC006128.1-201ENST00000624704 1661 ntBASIC17.17■□□□□ 0.34
NKX2-1P43699 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-1P43699 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-1P43699 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-1P43699 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-1P43699 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-1P43699 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
NKX2-1P43699 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
NKX2-1P43699 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-1P43699 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-1P43699 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-1P43699 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-1P43699 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
NKX2-1P43699 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms