Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC15.41■□□□□ 0.06
Hmgb3O54879 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Gm10232-201ENSMUST00000089221 720 ntBASIC15.41■□□□□ 0.06
Hmgb3O54879 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC15.41■□□□□ 0.06
Hmgb3O54879 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Hmgb3O54879 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Hmgb3O54879 Gm43182-201ENSMUST00000199476 2528 ntBASIC15.41■□□□□ 0.06
Hmgb3O54879 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Hmgb3O54879 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC15.41■□□□□ 0.06
Hmgb3O54879 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC15.4■□□□□ 0.06
Hmgb3O54879 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC15.4■□□□□ 0.06
Hmgb3O54879 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.4■□□□□ 0.06
Hmgb3O54879 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Hmgb3O54879 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Gm43566-201ENSMUST00000196851 808 ntBASIC15.39■□□□□ 0.05
Hmgb3O54879 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC15.39■□□□□ 0.05
Hmgb3O54879 AC124603.1-201ENSMUST00000223843 308 ntBASIC15.39■□□□□ 0.05
Hmgb3O54879 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.39■□□□□ 0.05
Hmgb3O54879 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Hmgb3O54879 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC15.38■□□□□ 0.05
Hmgb3O54879 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC15.38■□□□□ 0.05
Hmgb3O54879 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Dmtn-207ENSMUST00000228001 2437 ntBASIC15.38■□□□□ 0.05
Hmgb3O54879 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Hmgb3O54879 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Hmgb3O54879 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
Hmgb3O54879 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Hmgb3O54879 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC15.37■□□□□ 0.05
Hmgb3O54879 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Hmgb3O54879 Etf1-202ENSMUST00000180351 108 ntBASIC15.37■□□□□ 0.05
Hmgb3O54879 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC15.37■□□□□ 0.05
Hmgb3O54879 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC15.37■□□□□ 0.05
Hmgb3O54879 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Hmgb3O54879 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Hmgb3O54879 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.36■□□□□ 0.05
Hmgb3O54879 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC15.36■□□□□ 0.05
Hmgb3O54879 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Hmgb3O54879 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Hmgb3O54879 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 76.6 ms