Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 AC010525.1-201ENST00000585559 441 ntBASIC17.88■□□□□ 0.45
SDCBPO00560 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.88■□□□□ 0.45
SDCBPO00560 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.88■□□□□ 0.45
SDCBPO00560 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SDCBPO00560 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.87■□□□□ 0.45
SDCBPO00560 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDCBPO00560 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SDCBPO00560 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SDCBPO00560 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.86■□□□□ 0.45
SDCBPO00560 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDCBPO00560 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.86■□□□□ 0.45
SDCBPO00560 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SDCBPO00560 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SDCBPO00560 AC092667.1-201ENST00000434301 2586 ntBASIC17.85■□□□□ 0.45
SDCBPO00560 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.85■□□□□ 0.45
SDCBPO00560 AC008406.3-201ENST00000620001 1374 ntBASIC17.85■□□□□ 0.45
SDCBPO00560 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDCBPO00560 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.84■□□□□ 0.45
SDCBPO00560 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SDCBPO00560 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SDCBPO00560 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.84■□□□□ 0.45
SDCBPO00560 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 AC010141.3-201ENST00000456659 717 ntBASIC17.84■□□□□ 0.45
SDCBPO00560 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.84■□□□□ 0.45
SDCBPO00560 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
SDCBPO00560 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.84■□□□□ 0.45
SDCBPO00560 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SDCBPO00560 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDCBPO00560 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SDCBPO00560 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.83■□□□□ 0.45
SDCBPO00560 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.83■□□□□ 0.45
SDCBPO00560 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.83■□□□□ 0.45
SDCBPO00560 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SDCBPO00560 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
SDCBPO00560 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
SDCBPO00560 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.83■□□□□ 0.44
SDCBPO00560 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 UNC93B3-201ENST00000308076 687 ntBASIC17.83■□□□□ 0.44
SDCBPO00560 SLC47A1P1-202ENST00000449666 945 ntBASIC17.83■□□□□ 0.44
SDCBPO00560 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.83■□□□□ 0.44
SDCBPO00560 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDCBPO00560 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
SDCBPO00560 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.83■□□□□ 0.44
SDCBPO00560 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms