Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps53Q8CCB4 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Vps53Q8CCB4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Vps53Q8CCB4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps53Q8CCB4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Vps53Q8CCB4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps53Q8CCB4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps53Q8CCB4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Gm10653-202ENSMUST00000139570 835 ntBASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Gm4968-201ENSMUST00000071458 858 ntBASIC21.57■■□□□ 1.04
Vps53Q8CCB4 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps53Q8CCB4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps53Q8CCB4 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Vps53Q8CCB4 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps53Q8CCB4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Gm20760-201ENSMUST00000179197 648 ntBASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps53Q8CCB4 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms