Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.7■□□□□ 0.9
SHMT2P34897 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 KRT87P-202ENST00000534226 1464 ntBASIC20.69■□□□□ 0.9
SHMT2P34897 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.69■□□□□ 0.9
SHMT2P34897 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SHMT2P34897 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.69■□□□□ 0.9
SHMT2P34897 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SHMT2P34897 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.69■□□□□ 0.9
SHMT2P34897 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.69■□□□□ 0.9
SHMT2P34897 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.69■□□□□ 0.9
SHMT2P34897 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
SHMT2P34897 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
SHMT2P34897 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHMT2P34897 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.68■□□□□ 0.9
SHMT2P34897 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SHMT2P34897 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHMT2P34897 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SHMT2P34897 C11orf96-202ENST00000528572 1834 ntBASIC20.67■□□□□ 0.9
SHMT2P34897 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.67■□□□□ 0.9
SHMT2P34897 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 AC104564.3-201ENST00000582367 638 ntBASIC20.67■□□□□ 0.9
SHMT2P34897 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.67■□□□□ 0.9
SHMT2P34897 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.67■□□□□ 0.9
SHMT2P34897 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.67■□□□□ 0.9
SHMT2P34897 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHMT2P34897 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.66■□□□□ 0.9
SHMT2P34897 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
SHMT2P34897 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.66■□□□□ 0.9
SHMT2P34897 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.66■□□□□ 0.9
SHMT2P34897 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.66■□□□□ 0.9
SHMT2P34897 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.66■□□□□ 0.9
SHMT2P34897 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.66■□□□□ 0.9
SHMT2P34897 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.66■□□□□ 0.9
SHMT2P34897 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.66■□□□□ 0.9
SHMT2P34897 FBXW4P1-201ENST00000426721 2239 ntBASIC20.66■□□□□ 0.9
SHMT2P34897 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHMT2P34897 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SHMT2P34897 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.65■□□□□ 0.9
SHMT2P34897 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 AP004607.4-201ENST00000530158 1459 ntBASIC20.65■□□□□ 0.9
SHMT2P34897 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.65■□□□□ 0.9
SHMT2P34897 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.65■□□□□ 0.9
SHMT2P34897 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.65■□□□□ 0.9
SHMT2P34897 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
SHMT2P34897 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SHMT2P34897 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHMT2P34897 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SHMT2P34897 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SHMT2P34897 AC004854.2-201ENST00000608450 1441 ntBASIC20.64■□□□□ 0.89
SHMT2P34897 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHMT2P34897 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SHMT2P34897 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SHMT2P34897 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SHMT2P34897 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.64■□□□□ 0.89
SHMT2P34897 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.64■□□□□ 0.89
SHMT2P34897 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.64■□□□□ 0.89
SHMT2P34897 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHMT2P34897 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SHMT2P34897 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHMT2P34897 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
SHMT2P34897 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms