Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Vti1aO89116 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Vti1aO89116 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Vti1aO89116 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.03■□□□□ 0.8
Vti1aO89116 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Vti1aO89116 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Trmt13-210ENSMUST00000198454 880 ntBASIC20.03■□□□□ 0.8
Vti1aO89116 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vti1aO89116 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Vti1aO89116 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.02■□□□□ 0.8
Vti1aO89116 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Vti1aO89116 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.02■□□□□ 0.8
Vti1aO89116 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.02■□□□□ 0.8
Vti1aO89116 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.02■□□□□ 0.8
Vti1aO89116 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vti1aO89116 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Vti1aO89116 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Vti1aO89116 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.01■□□□□ 0.79
Vti1aO89116 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Vti1aO89116 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Vti1aO89116 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Vti1aO89116 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vti1aO89116 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Vti1aO89116 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20■□□□□ 0.79
Vti1aO89116 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Rab3c-203ENSMUST00000224180 967 ntBASIC20■□□□□ 0.79
Vti1aO89116 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20■□□□□ 0.79
Vti1aO89116 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20■□□□□ 0.79
Vti1aO89116 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Vti1aO89116 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Vti1aO89116 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20■□□□□ 0.79
Vti1aO89116 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vti1aO89116 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
Vti1aO89116 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.99■□□□□ 0.79
Vti1aO89116 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Vti1aO89116 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Vti1aO89116 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.99■□□□□ 0.79
Vti1aO89116 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.99■□□□□ 0.79
Vti1aO89116 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vti1aO89116 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
Vti1aO89116 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
Vti1aO89116 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.98■□□□□ 0.79
Vti1aO89116 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.98■□□□□ 0.79
Vti1aO89116 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Vti1aO89116 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Vti1aO89116 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
Vti1aO89116 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vti1aO89116 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vti1aO89116 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Vti1aO89116 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vti1aO89116 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.97■□□□□ 0.79
Vti1aO89116 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
Vti1aO89116 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vti1aO89116 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vti1aO89116 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.97■□□□□ 0.79
Vti1aO89116 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms