Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.32■■□□□ 1
HDDC3Q8N4P3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
HDDC3Q8N4P3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
HDDC3Q8N4P3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.32■■□□□ 1
HDDC3Q8N4P3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.32■■□□□ 1
HDDC3Q8N4P3 AC133041.1-202ENST00000642053 222 ntBASIC21.32■■□□□ 1
HDDC3Q8N4P3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 C1orf229-201ENST00000623686 2258 ntBASIC21.32■■□□□ 1
HDDC3Q8N4P3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
HDDC3Q8N4P3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.31■■□□□ 1
HDDC3Q8N4P3 GUSBP6-202ENST00000438529 1198 ntBASIC21.31■■□□□ 1
HDDC3Q8N4P3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.31■■□□□ 1
HDDC3Q8N4P3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 MIR4651-201ENST00000582622 73 ntBASIC21.31■■□□□ 1
HDDC3Q8N4P3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.31■■□□□ 1
HDDC3Q8N4P3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDDC3Q8N4P3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDDC3Q8N4P3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
HDDC3Q8N4P3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.3■■□□□ 1
HDDC3Q8N4P3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.3■■□□□ 1
HDDC3Q8N4P3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDDC3Q8N4P3 AC069152.1-201ENST00000438030 544 ntBASIC21.3■■□□□ 1
HDDC3Q8N4P3 CNN2P6-201ENST00000439038 900 ntBASIC21.3■■□□□ 1
HDDC3Q8N4P3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.3■■□□□ 1
HDDC3Q8N4P3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.3■■□□□ 1
HDDC3Q8N4P3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.3■■□□□ 1
HDDC3Q8N4P3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.3■■□□□ 1
HDDC3Q8N4P3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.29■■□□□ 1
HDDC3Q8N4P3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.29■■□□□ 1
HDDC3Q8N4P3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.29■■□□□ 1
HDDC3Q8N4P3 AC093827.2-201ENST00000512654 315 ntBASIC21.29■■□□□ 1
HDDC3Q8N4P3 SLC7A5P1-201ENST00000568957 537 ntBASIC21.29■■□□□ 1
HDDC3Q8N4P3 AC008175.2-201ENST00000612840 297 ntBASIC21.29■■□□□ 1
HDDC3Q8N4P3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
HDDC3Q8N4P3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDDC3Q8N4P3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDDC3Q8N4P3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDDC3Q8N4P3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
HDDC3Q8N4P3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDDC3Q8N4P3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
HDDC3Q8N4P3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.28■■□□□ 1
HDDC3Q8N4P3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 TERF1P5-201ENST00000477545 1207 ntBASIC21.27■■□□□ 1
HDDC3Q8N4P3 AF201337.1-201ENST00000520239 748 ntBASIC21.27■■□□□ 1
HDDC3Q8N4P3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.27■■□□□ 1
HDDC3Q8N4P3 AC120498.10-201ENST00000621827 505 ntBASIC21.27■■□□□ 1
HDDC3Q8N4P3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
HDDC3Q8N4P3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 AC092053.2-201ENST00000640557 1818 ntBASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 AC080038.3-201ENST00000623346 1952 ntBASIC21.27■□□□□ 0.99
HDDC3Q8N4P3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms