Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 AC092171.4-201ENST00000609130 632 ntBASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM3Q53GG5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC244015.2-201ENST00000616358 1861 ntBASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC099791.1-201ENST00000416440 715 ntBASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC009102.2-201ENST00000606772 1639 ntBASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.46■□□□□ 0.39
PDLIM3Q53GG5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
PDLIM3Q53GG5 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 YBX1P1-201ENST00000445822 960 ntBASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM3Q53GG5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 AC004687.1-201ENST00000579003 1625 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L2-201ENST00000561772 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L6-201ENST00000626483 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L1-201ENST00000627662 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L8-201ENST00000629013 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L3-201ENST00000630187 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L7-201ENST00000630678 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 DUX4L5-201ENST00000630834 1275 ntBASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM3Q53GG5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms