Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 TMPOP1-202ENST00000424642 1267 ntBASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 AL049637.2-201ENST00000641778 930 ntBASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 AC087499.1-201ENST00000418141 1075 ntBASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 AL355075.4-201ENST00000554988 638 ntBASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A6A6NMZ7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 PNMA6B-201ENST00000538162 1200 ntBASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A6A6NMZ7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 AC233263.1-201ENST00000578059 224 ntBASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 AC233702.5-201ENST00000584107 538 ntBASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A6A6NMZ7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 RBM17P2-201ENST00000616397 1405 ntBASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 MIR4785-201ENST00000585005 73 ntBASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A6A6NMZ7 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A6A6NMZ7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 C2orf69P4-201ENST00000565394 541 ntBASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 AP003733.4-201ENST00000623785 1697 ntBASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.26■□□□□ 0.67
COL6A6A6NMZ7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms