Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf4Q8BQZ5 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Gm26571-201ENSMUST00000181399 666 ntBASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf4Q8BQZ5 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
Cpsf4Q8BQZ5 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cpsf4Q8BQZ5 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf4Q8BQZ5 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Gm27801-201ENSMUST00000184174 223 ntBASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cpsf4Q8BQZ5 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cpsf4Q8BQZ5 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Gm42642-201ENSMUST00000200683 355 ntBASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cpsf4Q8BQZ5 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.1■□□□□ 0.49
Cpsf4Q8BQZ5 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms