Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CLRN1P58418 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CLRN1P58418 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.99■□□□□ 0.63
CLRN1P58418 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.99■□□□□ 0.63
CLRN1P58418 SUDS3P1-201ENST00000505831 966 ntBASIC18.99■□□□□ 0.63
CLRN1P58418 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CLRN1P58418 AC244015.2-201ENST00000616358 1861 ntBASIC18.99■□□□□ 0.63
CLRN1P58418 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLRN1P58418 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.98■□□□□ 0.63
CLRN1P58418 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 MIR572-201ENST00000384983 95 ntBASIC18.98■□□□□ 0.63
CLRN1P58418 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.98■□□□□ 0.63
CLRN1P58418 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.98■□□□□ 0.63
CLRN1P58418 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.98■□□□□ 0.63
CLRN1P58418 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.98■□□□□ 0.63
CLRN1P58418 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.98■□□□□ 0.63
CLRN1P58418 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN1P58418 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.98■□□□□ 0.63
CLRN1P58418 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN1P58418 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.97■□□□□ 0.63
CLRN1P58418 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN1P58418 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN1P58418 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN1P58418 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN1P58418 CLDN5-201ENST00000403084 2357 ntBASIC18.97■□□□□ 0.63
CLRN1P58418 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN1P58418 AP006587.3-201ENST00000525742 1516 ntBASIC18.96■□□□□ 0.63
CLRN1P58418 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.96■□□□□ 0.63
CLRN1P58418 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.96■□□□□ 0.63
CLRN1P58418 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CLRN1P58418 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.96■□□□□ 0.63
CLRN1P58418 AC005837.3-201ENST00000612163 286 ntBASIC18.96■□□□□ 0.63
CLRN1P58418 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN1P58418 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN1P58418 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN1P58418 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLRN1P58418 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN1P58418 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.96■□□□□ 0.63
CLRN1P58418 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN1P58418 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLRN1P58418 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.95■□□□□ 0.62
CLRN1P58418 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.95■□□□□ 0.62
CLRN1P58418 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.95■□□□□ 0.62
CLRN1P58418 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.95■□□□□ 0.62
CLRN1P58418 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.95■□□□□ 0.62
CLRN1P58418 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLRN1P58418 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.95■□□□□ 0.62
CLRN1P58418 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.95■□□□□ 0.62
CLRN1P58418 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN1P58418 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN1P58418 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CLRN1P58418 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.94■□□□□ 0.62
CLRN1P58418 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN1P58418 AC009237.3-201ENST00000393279 1427 ntBASIC18.94■□□□□ 0.62
CLRN1P58418 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLRN1P58418 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.94■□□□□ 0.62
CLRN1P58418 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.94■□□□□ 0.62
CLRN1P58418 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.94■□□□□ 0.62
CLRN1P58418 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CLRN1P58418 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN1P58418 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.94■□□□□ 0.62
CLRN1P58418 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLRN1P58418 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.93■□□□□ 0.62
CLRN1P58418 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CLRN1P58418 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
CLRN1P58418 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.93■□□□□ 0.62
CLRN1P58418 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms