Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf111Q99ML9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf111Q99ML9 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Serp2-204ENSMUST00000228055 705 ntBASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Rnf111Q99ML9 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Gm43017-201ENSMUST00000198296 752 ntBASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf111Q99ML9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Smad6-203ENSMUST00000179458 273 ntBASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf111Q99ML9 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf111Q99ML9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf111Q99ML9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms