Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC15.09■□□□□ 0.01
Cdx1P18111 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC15.09■□□□□ 0.01
Cdx1P18111 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC15.09■□□□□ 0.01
Cdx1P18111 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdx1P18111 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdx1P18111 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Cdx1P18111 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Gm45412-201ENSMUST00000210217 2275 ntBASIC15.09■□□□□ 0.01
Cdx1P18111 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx1P18111 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Cdx1P18111 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0
Cdx1P18111 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Cdx1P18111 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
Cdx1P18111 Gm5898-201ENSMUST00000121016 2071 ntBASIC15.08■□□□□ 0
Cdx1P18111 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC15.08■□□□□ 0
Cdx1P18111 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdx1P18111 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Cdx1P18111 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC15.07■□□□□ 0
Cdx1P18111 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC15.07■□□□□ 0
Cdx1P18111 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Dmtn-210ENSMUST00000228824 2377 ntBASIC15.07■□□□□ 0
Cdx1P18111 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdx1P18111 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Cdx1P18111 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdx1P18111 BC021767-201ENSMUST00000126387 1716 ntBASIC15.06■□□□□ 0
Cdx1P18111 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdx1P18111 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Cdx1P18111 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdx1P18111 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdx1P18111 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdx1P18111 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Cdx1P18111 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Gm42922-201ENSMUST00000195887 2078 ntBASIC15.05■□□□□ 0
Cdx1P18111 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC15.05■□□□□ 0
Cdx1P18111 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Cdx1P18111 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cdx1P18111 Gm9207-201ENSMUST00000198773 1115 ntBASIC15.05■□□□□ -0
Cdx1P18111 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdx1P18111 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
Cdx1P18111 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdx1P18111 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Cdx1P18111 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Cdx1P18111 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdx1P18111 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdx1P18111 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cdx1P18111 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms