Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.42■■□□□ 1.34
TPM1P09493 OR7E47P-201ENST00000546390 1422 ntBASIC23.42■■□□□ 1.34
TPM1P09493 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
TPM1P09493 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.42■■□□□ 1.34
TPM1P09493 AC241377.3-202ENST00000626088 1088 ntBASIC23.42■■□□□ 1.34
TPM1P09493 AC241585.3-202ENST00000628937 1088 ntBASIC23.42■■□□□ 1.34
TPM1P09493 AC245100.8-202ENST00000629247 1058 ntBASIC23.42■■□□□ 1.34
TPM1P09493 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
TPM1P09493 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.42■■□□□ 1.34
TPM1P09493 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.42■■□□□ 1.34
TPM1P09493 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TPM1P09493 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.41■■□□□ 1.34
TPM1P09493 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC23.41■■□□□ 1.34
TPM1P09493 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.41■■□□□ 1.34
TPM1P09493 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
TPM1P09493 AL031602.1-201ENST00000633169 911 ntBASIC23.41■■□□□ 1.34
TPM1P09493 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.41■■□□□ 1.34
TPM1P09493 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
TPM1P09493 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TPM1P09493 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.41■■□□□ 1.34
TPM1P09493 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.4■■□□□ 1.34
TPM1P09493 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
TPM1P09493 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.4■■□□□ 1.34
TPM1P09493 AL117332.1-201ENST00000622628 974 ntBASIC23.4■■□□□ 1.34
TPM1P09493 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.4■■□□□ 1.34
TPM1P09493 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.4■■□□□ 1.34
TPM1P09493 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
TPM1P09493 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.39■■□□□ 1.34
TPM1P09493 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.34
TPM1P09493 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
TPM1P09493 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
TPM1P09493 AF106564.1-201ENST00000607058 2553 ntBASIC23.39■■□□□ 1.34
TPM1P09493 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TPM1P09493 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.39■■□□□ 1.33
TPM1P09493 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
TPM1P09493 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TPM1P09493 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
TPM1P09493 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.38■■□□□ 1.33
TPM1P09493 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 TSPY9P-201ENST00000440215 945 ntBASIC23.38■■□□□ 1.33
TPM1P09493 TSPY11P-201ENST00000442607 1045 ntBASIC23.38■■□□□ 1.33
TPM1P09493 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.38■■□□□ 1.33
TPM1P09493 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
TPM1P09493 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.38■■□□□ 1.33
TPM1P09493 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.38■■□□□ 1.33
TPM1P09493 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
TPM1P09493 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TPM1P09493 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TPM1P09493 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.37■■□□□ 1.33
TPM1P09493 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
TPM1P09493 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TPM1P09493 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TPM1P09493 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TPM1P09493 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
TPM1P09493 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
TPM1P09493 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
TPM1P09493 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.36■■□□□ 1.33
TPM1P09493 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.36■■□□□ 1.33
TPM1P09493 AC133637.1-201ENST00000624115 1537 ntBASIC23.36■■□□□ 1.33
TPM1P09493 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
TPM1P09493 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
TPM1P09493 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.36■■□□□ 1.33
TPM1P09493 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
TPM1P09493 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
TPM1P09493 LINC01521-201ENST00000504184 1943 ntBASIC23.35■■□□□ 1.33
TPM1P09493 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms