Protein–RNA interactions for Protein: O95602

POLR1A, DNA-directed RNA polymerase I subunit RPA1, humanhuman

Predicted RBP Predictions only

Length 1,720 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1AO95602 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
POLR1AO95602 AC007322.4-201ENST00000509611 723 ntBASIC31.29■■■□□ 2.6
POLR1AO95602 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
POLR1AO95602 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
POLR1AO95602 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC31.29■■■□□ 2.6
POLR1AO95602 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC31.29■■■□□ 2.6
POLR1AO95602 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC31.29■■■□□ 2.6
POLR1AO95602 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
POLR1AO95602 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC31.29■■■□□ 2.6
POLR1AO95602 BET1L-204ENST00000410108 637 ntTSL 3 BASIC31.29■■■□□ 2.6
POLR1AO95602 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC31.29■■■□□ 2.6
POLR1AO95602 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC31.29■■■□□ 2.6
POLR1AO95602 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
POLR1AO95602 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
POLR1AO95602 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
POLR1AO95602 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC31.28■■■□□ 2.6
POLR1AO95602 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC31.28■■■□□ 2.6
POLR1AO95602 KRT18P20-201ENST00000548986 1279 ntBASIC31.28■■■□□ 2.6
POLR1AO95602 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC31.28■■■□□ 2.6
POLR1AO95602 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
POLR1AO95602 AC012676.1-201ENST00000574705 1949 ntBASIC31.28■■■□□ 2.6
POLR1AO95602 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
POLR1AO95602 AC068338.2-201ENST00000563278 1430 ntBASIC31.27■■■□□ 2.6
POLR1AO95602 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC31.27■■■□□ 2.6
POLR1AO95602 CASK-201ENST00000378154 2494 ntTSL 5 BASIC31.27■■■□□ 2.6
POLR1AO95602 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
POLR1AO95602 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC31.27■■■□□ 2.6
POLR1AO95602 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC31.27■■■□□ 2.6
POLR1AO95602 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
POLR1AO95602 SERP1-208ENST00000491660 830 ntTSL 2 BASIC31.27■■■□□ 2.6
POLR1AO95602 AP001160.3-201ENST00000601484 763 ntBASIC31.27■■■□□ 2.6
POLR1AO95602 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
POLR1AO95602 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
POLR1AO95602 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC31.26■■■□□ 2.59
POLR1AO95602 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC31.26■■■□□ 2.59
POLR1AO95602 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
POLR1AO95602 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC31.25■■■□□ 2.59
POLR1AO95602 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
POLR1AO95602 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC31.25■■■□□ 2.59
POLR1AO95602 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
POLR1AO95602 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC31.25■■■□□ 2.59
POLR1AO95602 AC006058.3-201ENST00000606217 1069 ntBASIC31.25■■■□□ 2.59
POLR1AO95602 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
POLR1AO95602 RHEB-204ENST00000472642 900 ntTSL 3 BASIC31.24■■■□□ 2.59
POLR1AO95602 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC31.24■■■□□ 2.59
POLR1AO95602 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
POLR1AO95602 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
POLR1AO95602 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC31.24■■■□□ 2.59
POLR1AO95602 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
POLR1AO95602 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC31.24■■■□□ 2.59
POLR1AO95602 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
POLR1AO95602 RPS2P4-201ENST00000476944 856 ntBASIC31.24■■■□□ 2.59
POLR1AO95602 AC009237.3-201ENST00000393279 1427 ntBASIC31.23■■■□□ 2.59
POLR1AO95602 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
POLR1AO95602 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
POLR1AO95602 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
POLR1AO95602 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
POLR1AO95602 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC31.23■■■□□ 2.59
POLR1AO95602 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC31.22■■■□□ 2.59
POLR1AO95602 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC31.22■■■□□ 2.59
POLR1AO95602 AC016405.3-201ENST00000607710 860 ntBASIC31.22■■■□□ 2.59
POLR1AO95602 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC31.22■■■□□ 2.59
POLR1AO95602 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
POLR1AO95602 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
POLR1AO95602 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
POLR1AO95602 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
POLR1AO95602 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC31.21■■■□□ 2.59
POLR1AO95602 MMD2-204ENST00000612910 778 ntTSL 5 BASIC31.21■■■□□ 2.59
POLR1AO95602 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
POLR1AO95602 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
POLR1AO95602 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC31.21■■■□□ 2.59
POLR1AO95602 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
POLR1AO95602 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
POLR1AO95602 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
POLR1AO95602 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
POLR1AO95602 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC31.21■■■□□ 2.59
POLR1AO95602 AC138907.5-202ENST00000569484 235 ntBASIC31.21■■■□□ 2.59
POLR1AO95602 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
POLR1AO95602 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
POLR1AO95602 ME2-208ENST00000638937 2471 ntTSL 5 BASIC31.2■■■□□ 2.59
POLR1AO95602 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC31.2■■■□□ 2.58
POLR1AO95602 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC31.2■■■□□ 2.58
POLR1AO95602 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
POLR1AO95602 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC31.19■■■□□ 2.58
POLR1AO95602 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC31.19■■■□□ 2.58
POLR1AO95602 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC31.19■■■□□ 2.58
POLR1AO95602 BAALC-201ENST00000297574 801 ntTSL 3 BASIC31.19■■■□□ 2.58
POLR1AO95602 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC31.19■■■□□ 2.58
POLR1AO95602 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC31.19■■■□□ 2.58
POLR1AO95602 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC31.19■■■□□ 2.58
POLR1AO95602 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC31.19■■■□□ 2.58
POLR1AO95602 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC31.19■■■□□ 2.58
POLR1AO95602 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC31.19■■■□□ 2.58
POLR1AO95602 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
POLR1AO95602 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
POLR1AO95602 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC31.18■■■□□ 2.58
POLR1AO95602 ESRRAP1-201ENST00000400596 1257 ntBASIC31.18■■■□□ 2.58
POLR1AO95602 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
POLR1AO95602 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC31.18■■■□□ 2.58
POLR1AO95602 OR10C1-204ENST00000622521 1039 ntBASIC31.18■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms