Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.37■□□□□ 0.85
RAE1P78406 AC099791.1-201ENST00000416440 715 ntBASIC20.37■□□□□ 0.85
RAE1P78406 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RAE1P78406 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.37■□□□□ 0.85
RAE1P78406 IGHV3-19-201ENST00000521488 291 ntBASIC20.37■□□□□ 0.85
RAE1P78406 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
RAE1P78406 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RAE1P78406 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RAE1P78406 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RAE1P78406 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.36■□□□□ 0.85
RAE1P78406 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.36■□□□□ 0.85
RAE1P78406 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.36■□□□□ 0.85
RAE1P78406 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.36■□□□□ 0.85
RAE1P78406 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.36■□□□□ 0.85
RAE1P78406 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.36■□□□□ 0.85
RAE1P78406 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RAE1P78406 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
RAE1P78406 AC003102.1-202ENST00000563394 1796 ntBASIC20.36■□□□□ 0.85
RAE1P78406 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.36■□□□□ 0.85
RAE1P78406 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.35■□□□□ 0.85
RAE1P78406 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 AP001330.3-201ENST00000520123 633 ntBASIC20.35■□□□□ 0.85
RAE1P78406 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.35■□□□□ 0.85
RAE1P78406 AC104564.3-201ENST00000582367 638 ntBASIC20.35■□□□□ 0.85
RAE1P78406 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.35■□□□□ 0.85
RAE1P78406 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.35■□□□□ 0.85
RAE1P78406 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.35■□□□□ 0.85
RAE1P78406 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.35■□□□□ 0.85
RAE1P78406 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAE1P78406 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 AC005229.4-201ENST00000610085 2198 ntBASIC20.34■□□□□ 0.85
RAE1P78406 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.34■□□□□ 0.85
RAE1P78406 AL031432.3-201ENST00000607698 485 ntBASIC20.34■□□□□ 0.85
RAE1P78406 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RAE1P78406 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RAE1P78406 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RAE1P78406 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.33■□□□□ 0.85
RAE1P78406 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.33■□□□□ 0.85
RAE1P78406 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
RAE1P78406 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.33■□□□□ 0.85
RAE1P78406 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.33■□□□□ 0.85
RAE1P78406 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RAE1P78406 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
RAE1P78406 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.33■□□□□ 0.85
RAE1P78406 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.33■□□□□ 0.85
RAE1P78406 AC027682.1-201ENST00000562846 899 ntBASIC20.33■□□□□ 0.85
RAE1P78406 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RAE1P78406 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.33■□□□□ 0.84
RAE1P78406 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RAE1P78406 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RAE1P78406 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RAE1P78406 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 AP006587.3-201ENST00000525742 1516 ntBASIC20.32■□□□□ 0.84
RAE1P78406 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.32■□□□□ 0.84
RAE1P78406 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.32■□□□□ 0.84
RAE1P78406 EDA-201ENST00000338901 1233 ntBASIC20.32■□□□□ 0.84
RAE1P78406 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.32■□□□□ 0.84
RAE1P78406 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.32■□□□□ 0.84
RAE1P78406 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.32■□□□□ 0.84
RAE1P78406 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
RAE1P78406 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.32■□□□□ 0.84
RAE1P78406 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAE1P78406 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.31■□□□□ 0.84
RAE1P78406 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.31■□□□□ 0.84
RAE1P78406 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.31■□□□□ 0.84
RAE1P78406 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RAE1P78406 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.31■□□□□ 0.84
RAE1P78406 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAE1P78406 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms