Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 AC010997.5-201ENST00000609182 354 ntBASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP1AQ9HD42 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP1AQ9HD42 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 AC239859.2-201ENST00000444165 318 ntBASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP1AQ9HD42 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP1AQ9HD42 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.33■□□□□ 0.53
CHMP1AQ9HD42 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CHMP1AQ9HD42 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms