Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 DUSP8P5-201ENST00000422884 1815 ntBASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.61■□□□□ 0.89
CLIP3Q96DZ5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 LINC01960-201ENST00000563759 1884 ntBASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLIP3Q96DZ5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 AC004911.1-201ENST00000416316 871 ntBASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLIP3Q96DZ5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.58■□□□□ 0.89
CLIP3Q96DZ5 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLIP3Q96DZ5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CLIP3Q96DZ5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLIP3Q96DZ5 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLIP3Q96DZ5 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLIP3Q96DZ5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLIP3Q96DZ5 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 AC092437.1-201ENST00000624794 1048 ntBASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 RARRES2P11-201ENST00000635158 484 ntBASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CLIP3Q96DZ5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms