Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.18■□□□□ 0.66
Six4Q61321 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Gm18671-201ENSMUST00000214826 683 ntBASIC19.18■□□□□ 0.66
Six4Q61321 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Six4Q61321 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Six4Q61321 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Six4Q61321 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Six4Q61321 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Six4Q61321 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Six4Q61321 Gm10849-201ENSMUST00000100397 618 ntBASIC19.17■□□□□ 0.66
Six4Q61321 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Six4Q61321 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Six4Q61321 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Six4Q61321 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Six4Q61321 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Six4Q61321 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.16■□□□□ 0.66
Six4Q61321 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.16■□□□□ 0.66
Six4Q61321 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Six4Q61321 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Six4Q61321 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Six4Q61321 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Six4Q61321 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Six4Q61321 Gm13534-201ENSMUST00000121169 513 ntBASIC19.15■□□□□ 0.66
Six4Q61321 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.15■□□□□ 0.66
Six4Q61321 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Six4Q61321 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Six4Q61321 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Six4Q61321 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Six4Q61321 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.14■□□□□ 0.65
Six4Q61321 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.14■□□□□ 0.65
Six4Q61321 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.14■□□□□ 0.65
Six4Q61321 AV356131-201ENSMUST00000206201 750 ntBASIC19.14■□□□□ 0.65
Six4Q61321 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
Six4Q61321 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Six4Q61321 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Six4Q61321 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.13■□□□□ 0.65
Six4Q61321 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Six4Q61321 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Six4Q61321 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Six4Q61321 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Six4Q61321 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Six4Q61321 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.13■□□□□ 0.65
Six4Q61321 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Six4Q61321 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.13■□□□□ 0.65
Six4Q61321 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Six4Q61321 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.12■□□□□ 0.65
Six4Q61321 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.12■□□□□ 0.65
Six4Q61321 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Six4Q61321 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms