Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm25239-201ENSMUST00000174915 86 ntBASIC37.92■■■■□ 3.66
Six4Q61321 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
Six4Q61321 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Six4Q61321 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
Six4Q61321 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
Six4Q61321 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.56■■■□□ 2.96
Six4Q61321 Gm15042-201ENSMUST00000120212 883 ntBASIC33.5■■■□□ 2.95
Six4Q61321 Gm15045-201ENSMUST00000117359 883 ntBASIC32.89■■■□□ 2.86
Six4Q61321 Gm24109-201ENSMUST00000175489 103 ntBASIC32.73■■■□□ 2.83
Six4Q61321 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Six4Q61321 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Six4Q61321 Psd-208ENSMUST00000224556 2034 ntBASIC32.24■■■□□ 2.75
Six4Q61321 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Six4Q61321 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.94■■■□□ 2.7
Six4Q61321 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Six4Q61321 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Six4Q61321 Gm23366-201ENSMUST00000175022 89 ntBASIC31.68■■■□□ 2.66
Six4Q61321 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Six4Q61321 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Six4Q61321 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Six4Q61321 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Six4Q61321 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Six4Q61321 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
Six4Q61321 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Six4Q61321 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Six4Q61321 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.13■■■□□ 2.57
Six4Q61321 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Six4Q61321 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Six4Q61321 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Six4Q61321 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Six4Q61321 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
Six4Q61321 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.75■■■□□ 2.51
Six4Q61321 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.7■■■□□ 2.51
Six4Q61321 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Six4Q61321 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Six4Q61321 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Six4Q61321 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Six4Q61321 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Six4Q61321 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Six4Q61321 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.27■■■□□ 2.44
Six4Q61321 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Six4Q61321 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.11■■■□□ 2.41
Six4Q61321 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Six4Q61321 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.93■■■□□ 2.38
Six4Q61321 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Six4Q61321 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.9■■■□□ 2.38
Six4Q61321 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.37
Six4Q61321 Gm25238-201ENSMUST00000174914 89 ntBASIC29.83■■■□□ 2.37
Six4Q61321 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Six4Q61321 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Six4Q61321 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Six4Q61321 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Six4Q61321 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.69■■■□□ 2.34
Six4Q61321 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.67■■■□□ 2.34
Six4Q61321 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Six4Q61321 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Six4Q61321 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Six4Q61321 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Six4Q61321 Gm27325-201ENSMUST00000175467 74 ntBASIC29.44■■■□□ 2.3
Six4Q61321 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
Six4Q61321 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
Six4Q61321 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.32■■■□□ 2.28
Six4Q61321 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.3■■■□□ 2.28
Six4Q61321 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
Six4Q61321 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.28■■■□□ 2.28
Six4Q61321 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Six4Q61321 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.2■■■□□ 2.27
Six4Q61321 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.26
Six4Q61321 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.2■■■□□ 2.26
Six4Q61321 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Six4Q61321 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
Six4Q61321 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.15■■■□□ 2.26
Six4Q61321 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
Six4Q61321 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Six4Q61321 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Six4Q61321 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Six4Q61321 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.9■■■□□ 2.22
Six4Q61321 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.89■■■□□ 2.22
Six4Q61321 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Six4Q61321 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Six4Q61321 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.76■■■□□ 2.19
Six4Q61321 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Six4Q61321 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.73■■■□□ 2.19
Six4Q61321 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Six4Q61321 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
Six4Q61321 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Six4Q61321 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Six4Q61321 Rab21-202ENSMUST00000218831 843 ntBASIC28.62■■■□□ 2.17
Six4Q61321 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Six4Q61321 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Six4Q61321 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Six4Q61321 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Six4Q61321 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
Six4Q61321 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Six4Q61321 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.47■■■□□ 2.15
Six4Q61321 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.45■■■□□ 2.14
Six4Q61321 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Six4Q61321 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
Six4Q61321 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC28.36■■■□□ 2.13
Six4Q61321 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms