Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC25.11■■□□□ 1.61
CTCFP49711 AC007322.4-201ENST00000509611 723 ntBASIC25.11■■□□□ 1.61
CTCFP49711 AC133561.5-201ENST00000635547 218 ntBASIC25.11■■□□□ 1.61
CTCFP49711 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.11■■□□□ 1.61
CTCFP49711 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
CTCFP49711 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CTCFP49711 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTCFP49711 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CTCFP49711 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTCFP49711 LINC01529-204ENST00000636474 1715 ntBASIC25.1■■□□□ 1.61
CTCFP49711 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CTCFP49711 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.1■■□□□ 1.61
CTCFP49711 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC25.1■■□□□ 1.61
CTCFP49711 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CTCFP49711 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.1■■□□□ 1.61
CTCFP49711 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CTCFP49711 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CTCFP49711 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.09■■□□□ 1.61
CTCFP49711 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CTCFP49711 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CTCFP49711 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.09■■□□□ 1.61
CTCFP49711 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CTCFP49711 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC25.09■■□□□ 1.61
CTCFP49711 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC25.09■■□□□ 1.61
CTCFP49711 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC25.09■■□□□ 1.61
CTCFP49711 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CTCFP49711 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CTCFP49711 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CTCFP49711 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
CTCFP49711 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CTCFP49711 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.08■■□□□ 1.61
CTCFP49711 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.08■■□□□ 1.61
CTCFP49711 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CTCFP49711 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
CTCFP49711 CYP2T3P-201ENST00000601990 817 ntBASIC25.08■■□□□ 1.61
CTCFP49711 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.08■■□□□ 1.61
CTCFP49711 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.08■■□□□ 1.61
CTCFP49711 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC25.08■■□□□ 1.6
CTCFP49711 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.07■■□□□ 1.6
CTCFP49711 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CTCFP49711 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.07■■□□□ 1.6
CTCFP49711 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.07■■□□□ 1.6
CTCFP49711 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CTCFP49711 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.07■■□□□ 1.6
CTCFP49711 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
CTCFP49711 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.07■■□□□ 1.6
CTCFP49711 C1QBPP2-201ENST00000528754 825 ntBASIC25.07■■□□□ 1.6
CTCFP49711 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CTCFP49711 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.07■■□□□ 1.6
CTCFP49711 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CTCFP49711 AC009237.3-201ENST00000393279 1427 ntBASIC25.06■■□□□ 1.6
CTCFP49711 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC25.06■■□□□ 1.6
CTCFP49711 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC25.06■■□□□ 1.6
CTCFP49711 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.06■■□□□ 1.6
CTCFP49711 SPIB-206ENST00000596074 847 ntTSL 2 BASIC25.06■■□□□ 1.6
CTCFP49711 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CTCFP49711 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.05■■□□□ 1.6
CTCFP49711 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.05■■□□□ 1.6
CTCFP49711 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
CTCFP49711 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.05■■□□□ 1.6
CTCFP49711 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC25.05■■□□□ 1.6
CTCFP49711 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC25.05■■□□□ 1.6
CTCFP49711 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.05■■□□□ 1.6
CTCFP49711 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CTCFP49711 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 AC010141.2-201ENST00000452426 721 ntBASIC25.04■■□□□ 1.6
CTCFP49711 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 PPOX-219ENST00000544598 813 ntTSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.04■■□□□ 1.6
CTCFP49711 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.04■■□□□ 1.6
CTCFP49711 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CTCFP49711 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
CTCFP49711 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 ISCU-212ENST00000547005 795 ntTSL 3 BASIC25.03■■□□□ 1.6
CTCFP49711 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC25.03■■□□□ 1.6
CTCFP49711 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC25.03■■□□□ 1.6
CTCFP49711 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
CTCFP49711 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CTCFP49711 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CTCFP49711 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms